AlphaFill Get Transplants
Get the ligands, cofactors, and ions that AlphaFill transplants into a protein's AlphaFold model, by UniProt accession. AlphaFold predicts apo (ligand-free) structures; AlphaFill adds small molecules by homology to experimental PDB structures. Returns the distinct transplanted compounds (PDB chemical-component codes), how many homologous hits support each, the best local fit RMSD (lower = better), and the source PDB entries. Use to hypothesize cofactor/metal/ligand/drug binding for a protein wh…
Overview
Get the ligands, cofactors, and ions that AlphaFill transplants into a protein's AlphaFold model, by UniProt accession. AlphaFold predicts apo (ligand-free) structures; AlphaFill adds small molecules by homology to experimental PDB structures. Returns the distinct transplanted compounds (PDB chemical-component codes), how many homologous hits support each, the best local fit RMSD (lower = better), and the source PDB entries. Use to hypothesize cofactor/metal/ligand/drug binding for a protein whose only structure is an AlphaFold model. No API key required.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default AlphaFill Get Transplants call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_AlphaFill_get_transplants
- Tool name
- AlphaFill_get_transplants
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse